Bio-informatics

Laboratory of Nematology
  Education
  Research
  Phylogenetics and evolution
  Maturity index Literature
  Plant-nematode interactions
  Bio-informatics
  Multitrophic Interactions
  Plants and Health
  Publications
  History of Nematology
  Organisation
  Staff
  Nematode in the picture
  News & Calendar
  Webshop
  Links
  Contact

GenFrag predicts cDNA-AFLP transcript derived fragments.
 
» Upload a FASTA file and define a search for restriction enzymes and adapters.
» More information on software and publications: the website of Pjotr Prins 



At the Laboratory of Nematology we write software for microarray analysis, taxonomic searches, QTL analysis, etc. Furthermore we have facilities for running bio-informatics tools like:

on our linuxnema servers. In addition we have access to large scale Linux clusters at other bio-informatics centers.



A custom-made DNA microarray based on partial sequence
information of the N. Gonorrhea genome can be used to
study gene gonococal expression.
(Source: Caroline Attarda Gienco, PhD at
www.pharmaasia.com)

Download GenEST
GenEST software is free to use and published on terms of the GNU Public License. Please quote below articles if you use this software. We would appreciate to hear from you and keep you informed on updates. Please send an E-mail to Pjotr Prins.

GenEST, a powerful bidirectional link between cDNA sequence data and gene expression profiles generated by cDNA-AFLP by Ling Qin, Pjotr Prins, John T. Jones, Herman Popeijus, Geert Smant, Jaap Bakker and Johannes Helder.

Reference the article at Nucleic Acids Research, 2001, Vol. 29, No. 7 1616-1622

Interesting links

For more information contact: Pjotr Prins.

  
Print this page

Contact
Geert Smant
Personal page
geert.smant@wur.nl
»  more Contact
MSc thesis subjects
» All MSc thesis subjects